PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.64
Common NameAMTR_s00025p00081740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 179aa    MW: 19565.4 Da    PI: 6.5181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.64genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.00036218420
                                             HHHHHHHHHHHHHHHHH CS
                                      HLH  4 ahnerErrRRdriNsaf 20
                                             +h  +Er+RR+++N+ +
  evm_27.model.AmTr_v1.0_scaffold00025.64  2 SHITVERNRRKQMNEHL 18
                                             7999**********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-9158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.22E-5141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSHITVERNR RKQMNEHLKG DQASIISGVI EFIKELHEVL QSLEAKKRRK SLSPSPGPSP  60
TPSPRLAASN NEIGFDNVSG LVGSCNSSVA DVEAKISGSN VVLRTVSRRI PGQVVKIIRV  120
LETLSFEILH LNISSMDDTV LYIFTIKIGL ECQLSVEELV QEVQQTFSGD SQNDIILA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14549KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625827.11e-109PREDICTED: transcription factor MUTE
SwissprotQ9M8K64e-66MUTE_ARATH; Transcription factor MUTE
TrEMBLW1PY071e-126W1PY07_AMBTC; Uncharacterized protein
STRINGSolyc01g080050.2.11e-76(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.13e-64bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]